PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007122-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LSD
Protein Properties Length: 177aa    MW: 18550.4 Da    PI: 8.2798
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007122-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD154.32.2e-17731125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCrt+L+YPrGAp+VRCalC+tV
  AHYPO_007122-RA  7 CSGCRTILMYPRGAPNVRCALCNTV 31
                     ************************9 PP

2zf-LSD132.11.9e-104670125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     Cg C+tlL+Y rGA+sVRC +C+tV
  AHYPO_007122-RA 46 CGCCHTLLMYSRGATSVRCLCCQTV 70
                     9***********************9 PP

3zf-LSD144.52.5e-1487110124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+C+ +L+YP+GApsV+Ca+C+ 
  AHYPO_007122-RA  87 CGNCQMTLMYPFGAPSVKCAVCHY 110
                      **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.9E-17432IPR005735Zinc finger, LSD1-type
PfamPF069435.6E-15731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.4E-124372IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-94670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.6E-985113IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-1387111IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQSQLVCSGC RTILMYPRGA PNVRCALCNT VTPAQSTGLE MDQIICGCCH TLLMYSRGAT  60
SVRCLCCQTV NLTNATPVSS QYSTVRCGNC QMTLMYPFGA PSVKCAVCHY ITNVGTTNGS  120
VSSSLHRQNG VSTSSSPTAC VPVSQTQTVV VENPMSFDGS GKLVSNVVVG VTTDKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687113.11e-98PREDICTED: protein LSD1 isoform X1
RefseqXP_010687114.11e-98PREDICTED: protein LSD1 isoform X2
RefseqXP_010687115.19e-99PREDICTED: protein LSD1 isoform X3
RefseqXP_010687116.19e-99PREDICTED: protein LSD1 isoform X3
SwissprotP940771e-62LSD1_ARATH; Protein LSD1
TrEMBLA0A0J8BV779e-99A0A0J8BV77_BETVU; Uncharacterized protein
STRINGGLYMA08G13630.16e-74(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.76e-64LSD family protein